PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.J106800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 221aa    MW: 26038.7 Da    PI: 9.4967
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.J106800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR176.45.7e-2428120191
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fYn+Y  + GFsvrks+ +    n+ei  r++vCs+eg+re ++ + ++k+rr+r+ +r+gCkakl++ +++ +gkw v+++  eH+H+la
  Pavir.J106800.1.p  28 RFYNTYDLQKGFSVRKSYVEWDGGNQEICLRKMVCSREGFREAKHINrANKKRRPRNISRVGCKAKLVIAQDRkTGKWFVKDFIDEHSHQLA 119
                        5****************************************999877689999****************99998****************98 PP

               FAR1  91 p 91 
                        p
  Pavir.J106800.1.p 120 P 120
                        6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.3E-2328120IPR004330FAR1 DNA binding domain
PROSITE profilePS502128.77183220IPR000651Ras-like guanine nucleotide exchange factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MADTSVESLS EYHDIVSKQF VSEEERFRFY NTYDLQKGFS VRKSYVEWDG GNQEICLRKM  60
VCSREGFREA KHINRANKKR RPRNISRVGC KAKLVIAQDR KTGKWFVKDF IDEHSHQLAP  120
PDLACLLRSH RRIRDEQKAD IAEMEISGIR KHQIMDILET RYGGYDKVGF IARDIYNFCY  180
RYNQGTIDAG DTKTMISHLG ERQQRDPQFF LSIWLMWRAI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466791.12e-95hypothetical protein SORBIDRAFT_01g014270
RefseqXP_010231784.22e-95PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0Q3RQA35e-95A0A0Q3RQA3_BRADI; Uncharacterized protein
TrEMBLC5WS692e-95C5WS69_SORBI; Putative uncharacterized protein Sb01g014270
TrEMBLI1HMH82e-95I1HMH8_BRADI; Uncharacterized protein
STRINGBRADI2G37795.17e-95(Brachypodium distachyon)
STRINGSb01g014270.16e-95(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2449976
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-34FAR1-related sequence 5